Journal Articles

Journal Articles | Conference Proceedings | Book Chapters

For an updated list of journal articles, please visit: https://scholar.google.com/citations?hl=en&user=H2uVVb0AAAAJ

J63. D. Dash, K. Teplansky, P. Ferrari, A. Babajani-Feremi, C.S. Calley, D. Heitzman, S.G. Austin, J. Wang, “Automatic Detection of ALS from Single-Trial MEG Signals during Speech Tasks: A Pilot Study,” Frontiers Psychology, vol. 15, 2024. DOI: http://doi.org/10.3389/fpsyg.2024.1114811

J62. C. S. Calley, W. Ho, A. Babajani-Feremi, C. Bodden, E. Tyler-Kabara, and D. F. Clarke, “A Proposed Stereoelectroencephalography Electrode Nomenclature and Call for Standardization,” Journal of Clinical Neurophysiology, 2024. DOI: https://doi.org/10.1097/wnp.0000000000001103

J61. S.H. Hojjati and A. Babajani-Feremi, "Seeing Beyond the Symptoms: Biomarkers and Brain Regions Linked to Cognitive Decline in Alzheimer's Disease,” Frontiers in Aging Neuroscience, vol. 16: 1356656, 2024. DOI: https://doi.org/10.3389/fnagi.2024.1356656

J60. S.H. Hojjati and A. Babajani-Feremi, "Seeing Beyond the Symptoms: Biomarkers and Brain Regions Linked to Cognitive Decline in Alzheimer's Disease." medRxiv (2023): 2023-04. DOI: https://doi.org/10.1101/2023.04.19.23288823

J59. A. Babajani-Feremi, H. Pourmotabbed, W. A. Schraegle, C. S. Calley, D. F. Clarke, and A. C. Papanicolaou, “MEG Language Mapping Using a Novel Automatic ECD Algorithm in Comparison with MNE, dSPM, and DICS Beamformer,” Frontiers in Neuroscience, In Press. Frontiers in Neuroscience, vol. 17, p. 1151885, 2023. DOI: https://doi.org/10.3389/fnins.2023.1151885

J58. M. Nahvi, G. Ardeshir, M. Ezoji, A. Tafakhori, S. Shafiee, and A. Babajani-Feremi, “An application of dynamical directed connectivity of ictal intracranial EEG recordings in seizure onset zone localization,” Journal of Neuroscience Methods, 2023, vol. 386, p.108891. DOI: https://doi.org/10.1016/j.jneumeth.2022.109775

J57. W. Schraegle and A. Babajani-Feremi, “Global Network Alterations of the Cognitive Phenotypes in Pediatric Temporal Lobe Epilepsy,” Epilepsy & Behavior, 2022, vol. 135, p. 108891. DOI: https://doi.org/10.1016/j.yebeh.2022.108891

J56. W. Schraegle, R. Tillman, A. Ailion, A. Babajani-Feremi, J. Titus, R. DeLeon, D. Clarke, B. Hermann, “Behavioral Phenotypes of Pediatric Temporal Lobe Epilepsy,” Epilepsia, vol. 63(5), pp. 1177-1188, February 2022. DOI: https://doi.org/10.1111/epi.17193

J55. H. Pourmotabbed, D. F. Clarke a, A. L. Curry, E. C. Tyler-Kabara, A. Babajani-Feremi, “Reproducibility of Graph Measures Derived from Resting-State MEG Functional Connectivity Metrics in Sensor and Source Spaces,” Human Brain Mapping, vol. 43(4), pp. 1342–1357, 2022. DOI: https://doi.org/10.1002/hbm.25726

J54. N. Hamedi, A. Khadem, M. Delrobaei, and A. Babajani-Feremi “Detecting ADHD Based on Brain Functional Connectivity Using Resting State MEG Signals,” Frontiers in Biomedical Technologies, vol. 9(2), pp.110-118, 2022. DOI: https://doi.org/10.18502/fbt.v9i2.8850

J53. S. H. Hojjati and A. Babajani-Feremi, “Prediction and Modeling of Neuropsychological Scores in Alzheimer’s Disease Using Multimodal Neuroimaging Data and Artificial Neural Networks,” Frontiers in Computational Neuroscience, 15(2021). DOI: https://doi.org/10.3389/fncom.2021.769982

J52. A. Fortugno, J.R. Bakke, A. Babajani-Feremi, J. Newman, T. Patel, “Functional Magnetic Resonance Imaging and Applications in Dermatology,” JID Innovations, Vol. 1, no. 3, September 2021, 100015. DOI: https://doi.org/10.1016/j.xjidi.2021.100015

J51. M. Ghasemi, A. Foroutannia, and A. Babajani-Feremi, “Characterizing Resting-State Networks in Parkinson’s disease: A Multi-Aspect Functional Connectivity Study,” Brain and Behavior, Vol. 11, no. 5, 2021: e02101. DOI: https://doi.org/10.1002/brb3.2101

J50. H. Pourmotabbed, J.W. Wheless, and A. Babajani-Feremi, “Lateralization of epilepsy using intra-hemispheric brain networks based on interictal MEG data,” Human Brain Mapping, Vol. 41, no. 11, pp. 2964-2979, 2020. DOI: https://doi.org/10.1002/hbm.24990

J49. N. Noorizadeh, K. Kazemi, H. Danyali, A. Babajani-Feremi, and A. Aarabi, “Multi-Atlas based Neonatal Brain Extraction using Atlas Library Clustering and Local Label Fusion,” Multimedia Tools and Applications, Vol. 79, no. 27/28, pp. 19411-19433, 2020. DOI: https://doi.org/10.1007/s11042-020-08749-1

J48. K. Mithani, S. Wong, M. Mikhail, H. Pourmotabbed, E. Pang, R. Sharma, I. Yau, A. Ochi, H. Otsubo, C. Snead, E. Donner, C. Go, E. Widjaja, A. Babajani-Feremi, and G. Ibrahim, “Somatosensory evoked fields predict response to vagus nerve stimulation,” NeuroImage: Clinical, Vol. 6, p.102205, 2020. DOI: https://doi.org/10.1016/j.nicl.2020.102205

J47. A. Babajani-Feremi, S.P. Fulton, C.M. Holder, A.F. Choudhri, F.A. Boop, and J.W. Wheless, “Localization of Expressive Language Cortex in a 2-Year-Old Child Using High-Gamma Electrocorticography,” Journal of Child Neurology, vol. 34(13), pp. 837-841, 2019. PMID:31339411, DOI: https://doi.org/10.1177/0883073819863999

J46. V. Youssofzadeh and A. Babajani-Feremi, “Mapping critical hubs of receptive and expressive language using MEG: A comparison against fMRI,” NeuroImage, vol. 201, p.116029, 2019. PMID:31325641, DOI: https://doi.org/10.1016/j.neuroimage.2019.116029

J45. R. Arya*, A. Babajani-Feremi*, A. W. Byars, J. Vannest, H.M. Greiner, J. W. Wheless, F.T. Mangano, and K. D. Holland, “A model for visual naming based on spatiotemporal dynamics of ECoG high-gamma modulation,” Epilepsy & Behavior, vol. 99, p.106455, 2019. PMID: 31419636, DOI: https://doi.org/10.1016/j.yebeh.2019.106455

J44. P. Mostame, A. Moharramipour, G. Hossein-Zadeh, and A. Babajani-Feremi, “Statistical significance assessment of phase synchrony in the presence of background couplings: An ECoG study,” Brain Topography, vol. 32(5), pp. 882-896, 2019. PMID: 31129754, DOI: https://doi.org/10.1007/s10548-019-00718-8

J43. J. Uh, T.E. Merchant, H.M. Conklin, Y. Li, Y. Han, A. Babajani-Feremi, R.J. Ogg, N.D. Sabin, D.J. Indelicato, and C. Hua, “Diffusion Tensor Imaging-Based Analysis of Baseline Neurocognitive Function and Posttreatment White Matter Changes in Pediatric Patients With Craniopharyngioma Treated With Surgery and Proton Therapy,” International Journal of Radiation Oncology, Biology, Physics, 109(2), pp.515-526. DOI: https://doi.org/10.1016/j.ijrobp.2020.08.060

J42. S. H. Hojjati, A. Ebrahimzadeh, A. Khazaee, and A. Babajani-Feremi, “Predicting Alzheimer’s disease using soft computing feature selection algorithms and based on rs-fMRI and sMRI,” Tabriz Journal of Electrical Engineering, vol. 49(2), pp. 551-563, 2019.

J41. S. H. Hojjati, A. Ebrahimzadeh, and A. Babajani-Feremi, “Identification of the early stage of Alzheimer’s disease using structural MRI and resting-state fMRI,” Frontiers in Neurology, vol. 10, p. 904, 2019. DOI: https://doi.org/10.3389/fneur.2019.00904

J40. S. H. Hojjati, A. Ebrahimzadeh, A. Khazaee, and A. Babajani-Feremi, “Predicting conversion from MCI to AD by integrating rs-fMRI and structural MRI,” Computers in Biology and Medicine, vol. 102(1), pp. 30-39, 2018. PMID: 30245275, DOI: https://doi.org/10.1016/j.compbiomed.2018.09.004

J39. A. Moharramipour, P. Mostame, G. Hossein-Zadeh, James W. Wheless, and A. Babajani-Feremi, “Comparison of statistical tests in effective connectivity analysis of ECoG data,” Journal of Neuroscience Methods, vol. 308, pp. 317-329, 2018. PMID: 30189285, DOI: https://doi.org/10.1016/j.jneumeth.2018.08.026.

J38. A. Babajani-Feremi, N. Noorizadeh, B. Mudigoudar, and James W. Wheless, “Predicting seizure outcome of vagus nerve stimulation using MEG-based network topology,” NeuroImage: Clinical, vol. 19, pp. 990-999, 2018. PMID: 30003036, PMCID: PMC6039837, DOI: https://doi.org/10.1016/j.nicl.2018.06.017.

J37. A. Babajani-Feremi, C.M. Holder, S. Narayana, S.P. Fulton, A.F. Choudhri, F.A. Boop, and J.W. Wheless, “Predicting postoperative language outcome using presurgical fMRI, MEG, TMS, and high gamma ECoG,” Clinical Neurophysiology, vol. 129, pp. 560-571, 2018. PMID:29414401, DOI: https://doi.org/10.1016/j.clinph.2017.12.031.

J36. S. Narayana, B. Mudigoudar, A. Babajani-Feremi, A.F. Choudhri, and F.A. Boop “Successful motor mapping with transcranial magnetic stimulation in an infant: A case report,” Neurology, vol. 89(20), pp. 2115-2117, 2018. PMID: 29021352, DOI: https://doi.org/10.1212/WNL.0000000000004650.

J35. C. Papanicolaou, R. Rezaie, S. Narayana, A. F. Choudhri, A. Babajani-Feremi, and F. A. Boop, and J. W. Wheless, “On the relative merits of invasive and non-invasive pre-surgical brain mapping: New tools in ablative epilepsy surgery,” Epilepsy Research, vol. 142, pp. 153-155, 2018. PMID: 28716297, DOI: https://doi.org/10.1016/j.eplepsyres.2017.07.002.

J34. S. H. Hojjati, A. Ebrahimzadeh, A. Khazaee, and A. Babajani-Feremi, “Predicting Alzheimer’s disease using DCA fusion algorithm based on rs-fMRI and sMRI,” Iranian Journal of Biomedical Engineering, vol. 11 (no 1), pp. 21-30, 2017.

J33. C. Papanicolaou, J. W. Wheless, A. Babajani-Feremi, S. Narayana, R. Rezaie, A. F. Choudhri, and F. A. Boop, “On the uses of fMRI,” Neurology, Published online, March 13, 2017.

J32. B. Elahian, M. Yeasin, B. Mudigoudar, J.W. Wheless, and A. Babajani-Feremi, “Identifying seizure onset zone from electrocorticographic recordings: A machine learning approach based on phase locking value,” Seizure, vol. 51, pp. 35-42, 2017.PMID: 28772200, DOI: https://doi.org/10.1016/j.seizure.2017.07.010.

J31. A.C. Papanicolaou, Marina Kilintari, R. Rezaie, S. Narayana, and A. Babajani-Feremi, “The role of the primary sensory cortices in early language processing,” Journal of Cognitive Neuroscience, vol. 29, pp. 1755-1765, 2017. PMID: 28557692, DOI: https://doi.org/10.1162/jocn_a_01147.

J30. A. Babajani-Feremi, “Neural mechanism underling comprehension of narrative speech and its heritability: study in a large population,” Brain Topography, vol. 30, pp. 592-60, 2017. PMID: 28214981, DOI: https://doi.org/10.1007/s10548-017-0550-6.

J29. S. H. Hojjati, A. Ebrahimzadeh, A. Khazaee, and A. Babajani-Feremi, “Predicting conversion from MCI to AD using resting-state fMRI, graph theoretical approach and SVM,” Journal of Neuroscience Methods, Vol. 282, pp. 69–80, 2017. PMID: 28286064 DOI: https://doi.org/10.1016/j.jneumeth.2017.03.006.

J28. A. Khazaee, A. Ebrahimzadeh, and A. Babajani-Feremi, “Classification of patients with MCI and AD from healthy controls using directed graph measures of resting-state fMRI,” Behavioural Brain Research, vol. 322, pp. 339-350, 2017. PMID: 27345822, DOI: https://doi.org/10.1016/j.bbr.2016.06.043.

J27. D. H. Heck, S. McAfee, Yu Liu, A. Babajani-Feremi, R. Rezaie, W. J. Fremann, J. W. Wheless, A.C.Papanicolaou, and R. Kozma, “Breathing as a fundamental rhythm of brain function,” Frontiers in Neural Circuits, Vol. 10, p. 115, 2017. PMID: 28127277, PMCID:PMC5226946, DOI: https://doi.org/10.3389/fncir.2016.00115.

J26. A. Chan, A. Trefler, and A. Babajani-Feremi, “Verifying Face Selectivity in the Human Prefrontal Cortex: Data from~ 500 Participants,” Journal of Vision, Vol. 16, No. 12, pp. 718-718, 2016, DOI: https://doi.org/10.1167/16.12.718.

J25. M. Kilintari, S. Narayana, A. Babajani-Feremi, R. Rezaie, and A.C. Papanicolaou, “Brain activation profiles during kinesthetic and visual imagery: an fMRI study,” Brain Research, vol. 1646, pp. 249-261, 2016. PMID: 27288703, DOI: https://doi.org/10.1016/j.brainres.2016.06.009.

J24. M. Antonakakis, S. I. Dimitriadis, M. Zervakis, S. Micheloyannis, R. Rezaie, A. Babajani-Feremi, G. Zouridakis, and A. C. Papanicolaou “Altered Cross-frequency Coupling in Resting-State MEG after Mild Traumatic Brain Injury,” International Journal of Psychophysiology, vol. 102, pp. 1–11, April 2016. PMID: 26910049, DOI: https://doi.org/10.1016/j.ijpsycho.2016.02.002.

J23. A. Babajani-Feremi, S. Narayana, R. Rezaie, A.F. Choudhri, S.P. Fulton, F.A. Boop, J.W. Wheless, and A.C. Papanicolaou, “Language mapping using high gamma electrocorticography, fMRI, and TMS versus electrocortical stimulation,” Clinical Neurophysiology, vol. 127, no. 3, pp. 1822-1836, 2016. PMID: 26679420, DOI: https://doi.org/10.1016/j.clinph.2015.11.017. ‡1

J22. A. Khazaee, A. Ebrahimzadeh, and A. Babajani-Feremi, “Application of statistical analysis and advanced machine learning methods on resting-state fMRI network for identification of mild cognitive impairment and Alzheimer's disease,” Brain Imaging and Behavior, vol. 10, pp. 799-817, 2016. DOI: https://doi.org/10.1007/s11682-015-9448-7.

J21. S. Dimitriadis, G. Zouridakis, R. Rezaie, A. Babajani-Feremi, and A.C. Papanicolaou, “Functional connectivity changes detected with magnetoencephalography after mild traumatic brain injury,” NeuroImage Clinical, vol. 9, pp. 519-531, 2015. PMID: 26640764, PMCID: PMC4632071, DOI: https://doi.org/10.1016/j.nicl.2015.09.011.

J20. A. Khazaee, A. Ebrahimzadeh, and A. Babajani-Feremi, “Identifying patients with Alzheimer's disease using resting-state fMRI and graph theory,” Clinical Neurophysiology, vol. 126, no. 11, pp. 2132-2141, 2015. PMID: 25907414, DOI: https://doi.org/10.1016/j.clinph.2015.02.060.

J19. A. Khazaee, A. Ebrahimzadeh, and A. Babajani-Feremi, “Application of pattern recognition and graph theoretical approaches to analysis of brain network in Alzheimer's disease,” Journal of Medical Imaging and Health Informatics vol. 5, no. 6, pp. 1145-1155, 2015. DOI: https://doi.org/10.1166/jmihi.2015.1513.

J18. M.S. Hadi, M. Siadat, and A. Babajani-Feremi, “Validation of brain connectivity analysis using fMRI simulation,” The International Journal of Engineering Systems Modelling and Simulation, vol. 7, no. 4, pp. 279-293, 2015. DOI: https://doi.org/10.1504/IJESMS.2015.072514.

J17. S. Narayana, R. Rezaie, S. S. McAfee, A. F. Choudhri, A. Babajani-Feremi, S. Fulton, F. B. Boop, J. W. Wheless, and A. C. Papanicolaou, “Assessing motor function in young children with transcranial magnetic stimulation,” Pediatric Neurology, vol. 52, no. 1, pp. 94-103, Jan 2015. PMID: 25439485, DOI: https://doi.org/10.1016/j.pediatrneurol.2014.08.031.

J16. A. Babajani-Feremi, R. Rezaie, S. Narayana, A. F. Choudhri, S. P. Fulton, F. A. Boop, J. W. Wheless, and A. C. Papanicolaou, “Variation in the topography of the speech production cortex verified by cortical stimulation and high gamma activity,” Neuroreport, vol. 25, no. 18, pp. 1411-7, Dec 17, 2014. PMID: 25371284, PMCID: PMC4232293, DOI: https://doi.org/10.1097/WNR.0000000000000276.

J15. M.M. Ali, S. Kumar, A. Shankar, N.R. Varma, A.S. Iskander, B. Janic, W.B. Chwang, R. Jain, A. Babajeni-Feremi, T.F. Borin, H. Bagher-Ebadian, S.L. Brown, J.R. Ewing, and A.S. Arbab, “Effects of tyrosine kinase inhibitors and CXCR4 antagonist on tumor growth and angiogenesis in rat glioma model: MRI and protein analysis study,” Translational Oncology vol. 6, pp. 660-9, 2013. PMID: 24466368, PMCID: PMC3890700, DOI: https://doi.org/10.1593/tlo.13559.

J14. L.J. Larson-Prior, R. Oostenveld, S. Della Penna, G. Michalareas, F. Prior, A. Babajani-Feremi et al., “Adding dynamics to the Human Connectome Project with MEG,” Neuroimage, vol. 80, pp. 190-201, 2013. PMID: 23702419, PMCID: PMC3784249, DOI: https://doi.org/10.1016/j.neuroimage.2013.05.056.

J13. A. Babajani-Feremi, V. Gumenyuk, T. Roth, C. L. Drake, and H. Soltanian-Zadeh, "Connectivity analysis of novelty process in habitual short sleepers," Neuroimage, vol. 63, pp. 1001-1010, Aug. 2012. PMID: 22906789, DOI: https://doi.org/10.1016/j.neuroimage.2012.08.011.

J12. J. M. Zempel, D. G. Politte, M. Kelsey, R. Verner, T. S. Nolan, A. Babajani-Feremi, F. Prior, and L. J. Larson-Prior, "Characterization of scale-free properties of human electrocorticography in awake and slow wave sleep States," Front. Neurol., vol. 3, p. 76, 2012. PMID: 22701446, PMCID: PMC3373008, DOI: https://doi.org/10.3389/fneur.2012.00076.

J11. B. Janic, K. Jafari-Khouzani, A. Babajani-Feremi, A. S. Iskander, N. R. Varma, M. M. Ali, R. A. Knight, and A. S. Arbab, "MRI tracking of FePro labeled fresh and cryopreserved long term in vitro expanded human cord blood AC133+ endothelial progenitor cells in rat glioma," PLoS One, vol. 7, p. e37577, 2012. PMID: 22662174, PMCID: PMC3360770, DOI: https://doi.org/10.1371/journal.pone.0037577.

J10. M.R. Nazem-Zadeh, S. Saksena, A. Babajani-Fermi, Q. Jiang3, H. Soltanian-Zadeh, M. Rosenblum, T. Mikkelsen, and R. Jain, “Segmentation of corpus callosum using diffusion tensor imaging: validation in patients with glioblastoma,” BMC Medical Imaging, vol. 12, no. 10, pp. 1-16, 2012. PMID: 22591335, PMCID: PMC3368740, DOI: https://doi.org/10.1186/1471-2342-12-10.

J9. J. Narang, R. Jain, A.S. Arbab, T. Mikkelsen, L. Scarpace, M.L. Rosenblum, D. Hearshen, and A. Babajani-Feremi, “Differentiating treatment-induced necrosis from recurrent/progressive brain tumor using nonmodel-based semiquantitative indices derived from dynamic contrast-enhanced T1-weighted MR perfusion,” Neuro-Oncology, vol. 13, no. 9, pp. 1037-46, Sep. 2011. PMID:21803763, PMCID:PMC3158013, DOI: https://doi.org/10.1093/neuonc/nor075.

J8. A. Babajani-Feremi and H. Soltanian-Zadeh, "Development of a variational scheme for model inversion of multi-area model of brain. Part II: VBEM method," Mathematical Biosciences, vol. 229, pp. 76-92, 2011. PMID: 21087617, DOI: https://doi.org/10.1016/j.mbs.2010.11.001.

J7. A. Babajani-Feremi and H. Soltanian-Zadeh, "Development of a variational scheme for model inversion of multi-area model of brain. Part I: Simulation evaluation," Mathematical Biosciences, vol. 229, pp. 64-75, 2011. PMID: 21070788, DOI: https://doi.org/10.1016/j.mbs.2010.10.009.

J6. A. Babajani-Feremi and H. Soltanian-Zadeh, “Multi-Area Neural Mass Modeling of EEG and MEG Signals,” NeuroImage, vol. 52, no. 3, pp. 793-811, 2010. PMID: 20080193, DOI: https://doi.org/10.1016/j.neuroimage.2010.01.034.

J5. M.M. Ali, B. Janic, A. Babajani-Feremi, N.R.S. Varma, A.S.M Iskander, J. Anagli, and A.S. Arbab, “Changes in Vascular Permeability and Expression of Different Angiogenic Factors Following Anti-Angiogenic Treatment in Rat Glioma,” PLoS ONE, vol. 5, no. 1, pp. 1-11, 2010 (e8727). PMID:20090952, PMCID: PMC2806917, DOI: https://doi.org/10.1371/journal.pone.0008727.

J4. A. Babajani-Feremi, H. Soltanian-Zadeh, and John E. Moran, “Integrated MEG/fMRI Model Validated Using Real Auditory Data,” Brain Topography, vol. 21, pp. 61-74, 2008. PMID: 18478325, PMCID: PMC3762242, DOI: https://doi.org/10.1007/s10548-008-0056-3.

J3. A. Babajani-Feremi, and H. Soltanian-Zadeh, “Combined MEG and fMRI model,” Journal of Iranian Association of Electrical and Electronics Engineers, vol. 2, no. 2, pp. 1-17, 2006.

J2. A. Babajani and H. Soltanian-Zadeh, "Integrated MEG/EEG and fMRI model based on neural masses," IEEE Trans. Biomedical Engineering, vol. 53, pp. 1794-1801, 2006. PMID:16941835, DOI: https://doi.org/10.1109/TBME.2006.873748.

J1. Babajani, M. H. Nekooei, and H. Soltanian-Zadeh, "Integrated MEG and fMRI model: synthesis and analysis," Brain Topography, vol. 18, pp. 101-113, 2005. PMID:16341578, DOI: https://doi.org/10.1007/s10548-005-0279-5

‡1 This paper was highlighted in Clinical Neurophysiology on the Official Twitter, Facebook, and Instagram Pages of the International Federation of Clinical Neurophysiology (IFCN). It was also introduced on the Social Media Editor's LinkedIn Page.